This tool pushes to the right the entire sequence to the right of the tool, or, if you have the Option key held down, it pushes to the left the entire sequence to the left of the tool. For example, you can also request that the matrix be expanded on either end as necessary as you move sequences around by default this option is off. There are additional options in the popup menu of the tool's button. This tool move move a selected block of cells. You can also request that the matrix be expanded on either end as necessary as you move sequences around by default this option is off. There are additional options in the popup menu of the tool's button that allow you to request that entire sequences are moved, or all sequences on one side. If you hold the Option key down, then all sequences other than those delimited will be moved. This tool allows one to draw a line between two sites, through one or more sequences, as shown in the following image: If you wish, you can move more than a single, contiguous block by turning on "Move Selected Block" within the tool's popup menu, then using the tool to move selected bases and gaps.
If you move the tool between two bases it will let you split a block in two, inserting gaps. This tool will move a contiguous block of a single sequence.
ALIGN TWO SEQUENCES ONLINE MANUAL
There are some visualization features in Mesquite that can aid in manual alignment. (Recalculations will be done once you let go of the mouse button, in any event.) If some of these calculations take a while, this can dramatically slow down use of these tools. If this is chosen, then all calculations (e.g., charts, character tracings, etc.) that depend upon these data will be redone as you use these tools.
ALIGN TWO SEQUENCES ONLINE UPDATE
These tools have a "Live update analyses, etc." option in their popup menus. There are several tools available for moving bases by hand. Manual Alignment Tools Moving bases by hand Various statistics about taxa based about alignments.
The citation for this tool is provided below. The Align package was written by David R. You may also wish to consider using the Opal and Opalescent packages for Mesquite. Many of the sequence alignment tools in Mesquite are provided by the Align package provides some basic tools involving alignment of sequence data.
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